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Paychex Flex for nonprofits

Payroll and HR provider for small and midsize employers, with tax filing, benefits, and time tracking options.

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What it does

Paychex Flex runs payroll, calculates and files payroll taxes, and gives employees a self-service portal for pay stubs and tax forms. It comes in several packages that add HR tools, reporting, and more hands-on support. Nonprofits use it when they want payroll and HR handled by one provider with phone support. Paychex does not publish package prices and gives quotes on request.

What nonprofits pay

Pricing on request

Pricing checked November 6, 2026. Source. Prices change. Check with the vendor before you buy.

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